RnoEX6020521 @ rn6
Exon Skipping
Gene
ENSRNOG00000024693 | Zfp831
Description
zinc finger protein 831 [Source:RGD Symbol;Acc:1565819]
Coordinates
chr3:172724739-172801157:+
Coord C1 exon
chr3:172724739-172724878
Coord A exon
chr3:172734946-172735082
Coord C2 exon
chr3:172801000-172801157
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGCACTGCTCTGCCCCACAGGTG
3' ss Score
11.33
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTCCCTATCCAACAGTCCCAGGGCTGAGGGCCGAGGACCAAGTGTCCAGGCCACGGTGGAGGAAAGAACTGTGGCGTAGGAGGGTGAAGACATCTCGTGAGAATGCCAAGCAGAAGAAATTGATGCTTCAATCCAAGAG
Seq A exon
GTGTGAAGGGAGTTTCTGGCAGAGAGCCAAACGACTGTGCAAGCCACCCTGGTTGCCGAGAAGAAGCTGTCTCCCCCACCGACTTGAGGGGTTAGAGCCACGGGGGACCTTTGGGAGGAGTTCAGCAGAAGCGTCAG
Seq C2 exon
GTCTAAACGTACAAGGAGAGCCATCTTGTGCCAGCAAAGACTTGTCTGTTGATCGTAGGAACAAAGACGGGAAAGGTGACTGTAGTCAGACTTCAGGACCCACGTCTCCTGCTACAAACTCAAAAACCATCTTGGAGACAGACAAATCAACTCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024693-'6-11,'6-5,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=0.511 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCCAACAGTCCCAGGGCT
R:
GTTTGTAGCAGGAGACGTGGG
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]