MmuEX0053652 @ mm9
Exon Skipping
Gene
ENSMUSG00000050600 | Zfp831
Description
zinc finger protein 831 [Source:MGI Symbol;Acc:MGI:3641861]
Coordinates
chr2:174473582-174529681:+
Coord C1 exon
chr2:174473582-174473724
Coord A exon
chr2:174483174-174483310
Coord C2 exon
chr2:174529524-174529681
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGCACTGCTCTGCCCCACAGGTG
3' ss Score
11.33
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTTCCCTATCCATCAGTCCCAGAGCTGAGGGCTGAGGACCAAGTATCCAGGCCACGGTGGAAGAAAGAACAACTATGGCGTAGAAAGGTGAAGACATCTCGTGAAAACACCAAACAGAAGAAACTGAGGCTTCATTCTAAAAG
Seq A exon
GTGTGAAGGGAGTTTCTGGCAGAGAGCCAAACGCCTGTGCAAGCCACCCTGGTTGCCAAGAAGAAGCTGTCTCCCCCACCGACTTGAGGGGTTAGAGCCACGGGGGACCCTTGGGAGGAGTTCGGCAGAAGTGGCAG
Seq C2 exon
GTCGAAATGTACAAGGGGAGCCATCTTGTGCCAGCAAAGACTTGTCTGTGTCTCATGGGAACAAAGAAAAGGAAGGTGACTGTAGTCAGACTTCGAGACCCATGTCTCCGGGCATGAGCTCAAAAACCATGTTGGAAATGGACAAATCAGCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050600-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.574 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGAGGACCAAGTATCC
R:
TTTTTGAGCTCATGCCCGGAG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: