BtaEX6066986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003635 | SLC35C2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr13:75799806-75801916:-
Coord C1 exon
chr13:75801741-75801916
Coord A exon
chr13:75800482-75800611
Coord C2 exon
chr13:75799806-75800154
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCTCTCTTCCCGCAGGAA
3' ss Score
13.77
5' ss Seq
GAGGTACCC
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTCTCCATTTGTCCACATCTGAGAAAATCTTCCGTTTCCAGGACACAGGGCTGCTCCTGCGGGTGCTCGGGAGCCTCTTCCTTGGCGGGATTCTCGCCTTTGGTTTGGGCTTCTCTGAGTTCCTCCTGGTCTCCAGGACCTCCAGCCTCACTCTCTCCATTGCTGGCATTTTTAAG
Seq A exon
GAAGTCTGCACTTTGCTGTTGGCCGCGCATCTTCTGGGTGACCAGATCAGCCTCCTGAACTGGCTGGGCTTTGCCCTCTGCCTCTCAGGAATATCTCTGCACATCGCCCTCAAAGCCCTGCATGCCAGAG
Seq C2 exon
GTGATGGCGCCCCTAAGCCCCTGAAGGGGCTGGGCTCCAACCCCGACCTGGAGCTGCTGCTCCGGAGCAGCCAGCCAGAGGATGAGGACAACGAGGAGGAGGAATACTTTGTGGCCCAGGGGCAGCAGTGAGCAGCCGGGGGACCAGTCAGCGGCTTGGGGACCCGGGTGGTTCCTCCCGGCCGCCGGGCAGCAGTGGGCCCAGCATCTCCCGGGCCAGGCCTCGGAAGGGCATGCGACCGGTGCTGGGGCCAGGGCAGAGAGCTGGTGTGCTGGGTGGGCGCCAGGCCAGCCTCTGGCCTGGCCGGAGCAGGGGCCCAGCGCACTGGTGTCGCAGCAGGAGCAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003635-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.326
Domain overlap (PFAM):
C1:
PF084496=UAA=PD(7.9=16.9),PF0315111=TPT=PD(21.6=13.6),PF0315111=TPT=PU(61.1=98.3)
A:
PF0315111=TPT=PD(36.8=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGTTTCCAGGACACAGG
R:
CCTCCTCGTTGTCCTCATCCT
Band lengths:
247-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]