GgaEX1053316 @ galGal3
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
NA
Coordinates
chr20:10676199-10678341:-
Coord C1 exon
chr20:10678166-10678341
Coord A exon
chr20:10676996-10677125
Coord C2 exon
chr20:10676199-10676844
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTTCTTTCCACAGGAA
3' ss Score
12.72
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCCTGCCTTTGTCCGTATCAGAGAGGCTCTTCCACTTCCATGAAGCAGGAGTGATGTTCTGTATGGTAGGAAAGCTGTTGTTGGGTGGAATTCTTGCCTTTGGTCTAGGCTTTTCTGAGTTCCTCTTGGTTTCCAGAACATCTAGCCTCACCCTTTCTATTGCTGGTATTTTTAAG
Seq A exon
GAAATCTGTGTTTTATTTCTTGCCACACACCTGCTGGGAGACCGCCTCAGTCCCTTAAACTGGCTTGGCTTTGCTGTCTGTCTGTCAGGAATCTCCCTTCATGTCATTCTCAAAGCTGTAAATTCCAAAG
Seq C2 exon
GTGAGAAAACACTGAATCTACACAAAGAGACGTGCTCTGAGCCTGTCCTGGAGCTGCTGCTGCACCACACTGAACATGGGGAGGAGGAGGAAGATGTTGGAACACTACAACAACACTGAATGAACGTGAAGCACAGTTCCCTCCTCTATACTTACCAGGTCTGTCTGACAGCTGCCTAGGAAGAAGGTCCAAGATTCTCTGTCTTTGACTTTCCAAAGGAGAATGAGGGTCCAGTGAGAGCCCTGCTGTTCTACTGCAGCGCGGATCCATAGATGCTGCACAGCAAACAAGCAATACCCTTTGCTGGAGAGCAAACTTGGAAGATGAATCCCAGTTCAGCAGAAGTAAAATGGTGAGACTGGGAAAACTTTCTAGGGAATCCTGAAGGCTTTGTATTGAGATTGCAGACCACGAGCTGCGGATCAAGTATGGACATGTCTGGACTGCAGGCTGAGTGGTTCCAGGATGGTTTTAGTGGTGTTTAGGCTTTAGCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'15-10,'15-9,16-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(38.4=100)
A:
PF0315111=TPT=PD(23.2=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCTGTTGTTGGGTGGA
R:
GGGAACTGTGCTTCACGTTCA
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]