RnoEX0082339 @ rn6
Exon Skipping
Gene
ENSRNOG00000018649 | Slc35c2
Description
solute carrier family 35 member C2 [Source:RGD Symbol;Acc:1311250]
Coordinates
chr3:161801229-161803071:-
Coord C1 exon
chr3:161802896-161803071
Coord A exon
chr3:161802063-161802192
Coord C2 exon
chr3:161801229-161801908
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGCCTCTACCCACAGGAA
3' ss Score
12.53
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTCTCCATTTGTCCACCTCTGAGAAGATCTTCCGCTTCCAGGACCCGGGCCTGCTCCTGTGGGTTCTGGGGAGCCTCCTCCTCGGAGGGATTCTGGCCTTTGGCTTGGGCTTCTCTGAGTTCCTCTTGGTCTCCAGAACCTCGAGCCTCACACTCTCCATTGCTGGCATTTTTAAG
Seq A exon
GAAGTCTGCACCCTGCTATTGGCAGCTCACCTGCTGGGTGACCAGATCAGCCTTCTGAACTGGCTGGGCTTCGCCCTCTGCCTCTCTGGCATCTCCCTTCACGTGGCCCTCAAGGCCCTACATTCCAGAG
Seq C2 exon
GTGATGGTGGCCCTAAGCCCCGGAAGGGCCTGGGCTCCAGCGCCGACCTGGAGCTGTTGCTCCAGAGCAGCCAGCAGGAGGAGGACAACGGTGAAGAGGAGTATTTCATGACCCAGGGGCAGCAGTGACCAGCTCGGAAGCAGCATAAGCAGACCGCTCTCCAGTCGGCCACTCTCCAGTCGCCACTGCTCCAGGGGCCCGGCTGGTTCCTCAGAGCAGCTGCAAGTGGTGGCCGCAGAGCCACCGGCAAGAGCTCTGAGGCTCCTGTTCTCTCCTGTGCAGCTTGGTCCCACAAAGCGAAGCCAGGCTCACCTGGAGTCTGAGCTGTCAGTGAAGGGAGCCAGTGGCCTGTCCACTGTTGCTCTGGCTCTCAGAGGTGAGGTAGTTTCTCAGGTTCAGACTGTGGGACATCTGGGAAGGAGTCATGGAGAGGCTGGGCCTCATCACCTGGACAGCAGCTTCCTCAGAGAGTAGATTTATTTATAGTTGAAATAATGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018649_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.310
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(38.4=100)
A:
PF0315111=TPT=PD(23.2=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTCTCCATTGCTGGCAT
R:
CTTGCAGCTGCTCTGAGGAAC
Band lengths:
254-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]