GgaEX1053316 @ galGal4
Exon Skipping
Gene
ENSGALG00000020939 | SLC35C2
Description
solute carrier family 35 member C2 [Source:RefSeq peptide;Acc:NP_001026036]
Coordinates
chr20:11071603-11073745:-
Coord C1 exon
chr20:11073570-11073745
Coord A exon
chr20:11072400-11072529
Coord C2 exon
chr20:11071603-11072248
Length
130 bp
Sequences
Splice sites
3' ss Seq
CATGTTTTTTCTTTCCACAGGAA
3' ss Score
12.72
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCCTGCCTTTGTCCGTATCAGAGAGGCTCTTCCACTTCCATGAAGCAGGAGTGATGTTCTGTATGGTAGGAAAGCTGTTGTTGGGTGGAATTCTTGCCTTTGGTCTAGGCTTTTCTGAGTTCCTCTTGGTTTCCAGAACATCTAGCCTCACCCTTTCTATTGCTGGTATTTTTAAG
Seq A exon
GAAATCTGTGTTTTATTTCTTGCCACACACCTGCTGGGAGACCGCCTCAGTCCCTTAAACTGGCTTGGCTTTGCTGTCTGTCTGTCAGGAATCTCCCTTCATGTCATTCTCAAAGCTGTAAATTCCAAAG
Seq C2 exon
GTGAGAAAACACTGAATCTACACAAAGAGACGTGCTCTGAGCCTGTCCTGGAGCTGCTGCTGCACCACACTGAACATGGGGAGGAGGAGGAAGATGTTGGAACACTACAACAACACTGAATGAACGTGAAGCACAGTTCCCTCCTCTATACTTACCAGGTCTGTCTGACAGCTGCCTAGGAAGAAGGTCCAAGATTCTCTGTCTTTGACTTTCCAAAGGAGAATGAGGGTCCAGTGAGAGCCCTGCTGTTCTACTGCAGCGCGGATCCATAGATGCTGCACAGCAAACAAGCAATACCCTTTGCTGGAGAGCAAACTTGGAAGATGAATCCCAGTTCAGCAGAAGTAAAATGGTGAGACTGGGAAAACTTTCTAGGGAATCCTGAAGGCTTTGTATTGAGATTGCAGACCACGAGCTGCGGATCAAGTATGGACATGTCTGGACTGCAGGCTGAGTGGTTCCAGGATGGTTTTAGTGGTGTTTAGGCTTTAGCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020939-'15-14,'15-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.231
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(38.4=100)
A:
PF0315111=TPT=PD(23.2=79.5)
C2:
NO
Main Skipping Isoform:
ENSGALT00000039096fB12058
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGCTGTTGTTGGGTGGA
R:
GGGAACTGTGCTTCACGTTCA
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]