HsaEX6078495 @ hg19
Exon Skipping
Gene
ENSG00000080189 | SLC35C2
Description
solute carrier family 35, member C2 [Source:HGNC Symbol;Acc:17117]
Coordinates
chr20:44978167-44980865:-
Coord C1 exon
chr20:44980690-44980865
Coord A exon
chr20:44979400-44979529
Coord C2 exon
chr20:44978167-44979163
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTTCTCTGCCCCCAGGAA
3' ss Score
11.55
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCTCCATTTGTCCACATCTGAGAAAATCTTCCGTTTCCAGGACACAGGGCTGCTCCTGCGGGTACTTGGGAGCCTCTTCCTTGGCGGGATTCTCGCCTTTGGTTTGGGCTTCTCTGAGTTCCTCCTGGTCTCCAGAACCTCCAGCCTCACTCTCTCCATTGCCGGCATTTTTAAG
Seq A exon
GAAGTCTGCACTTTGCTGTTGGCAGCTCATCTGCTGGGCGATCAGATCAGCCTCCTGAACTGGCTGGGCTTCGCCCTCTGCCTCTCGGGAATATCCCTCCACGTTGCCCTCAAAGCCCTGCATTCCAGAG
Seq C2 exon
GTGATGGTGGCCCCAAGGCCTTGAAGGGGCTGGGCTCCAGCCCCGACCTGGAGCTGCTGCTCCGGAGCAGCCAGCGGGAGGAAGGTGACAATGAGGAGGAGGAGTACTTTGTGGCCCAGGGGCAGCAGTGACCAGCCAGGGCAAATGGCTTAGAAGCAGGCCACTCCCCAGCCTGCTGCCAGCACTCACTGTGCTCAAGCCGCCAGGGCTCATCATGGTAGCTGGGAGCTGTGGACGGGAGTCACCAGGTGGTGGGGCCAAGCCAGGGACTCATGACTTTTGCCCCTCCCTTCAGAGCCTGGTCACACAAGGGGCGAGCACCAGGCCAGCCTGGGACTGGCCAGAGCTGGGCCCAAGCTGCGCTGGAATCGCAGCAGGAGAGGGGAGTGGGCTGGTTCTTCCCACCACTTCCCAGGCTCTGACAGCCGAGACTCATTTCCAAGGCACAGCAGCTTTCTAAAGGGACTGAGTTTGGACTGGGTTTTGGACCTCCAGGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080189-'17-21,'17-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.209
Domain overlap (PFAM):
C1:
PF0315111=TPT=FE(38.4=100)
A:
PF0315111=TPT=PD(23.2=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTCCATTGCCGGCATTT
R:
CAGCTACCATGATGAGCCCTG
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)