BtaEX6067651 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6618417-6621371:+
Coord C1 exon
chr16:6618417-6618530
Coord A exon
chr16:6620170-6620253
Coord C2 exon
chr16:6621243-6621371
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATATTTTATTTCTGTTGCAGTCA
3' ss Score
8.53
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ATTTCTGAACAGAAAGAAAGAGAACGAGGTTCTAACTTGGCCTTCATATTCCGACTGCCTTTTGCTGCTGGAAGGGTGTTCAGTATCAGCATGTTGGACACACTTCTTTATCAG
Seq A exon
TCATTTGTGAAGGACTATATGATTTCTATCACCAGACTTCTGTTGGGATTGGACACTACACCAGGATCGGGATTTCTTTGCTCT
Seq C2 exon
ATGAAGATCACAGAGGATGACCTATGGATTAGGACTTATGCCAGACTTTATCAGAAGTTATGTTCCTCTACTGGAGATGTTCCCATTGGTATTTACAGGACGGAATCTCAAAAGCTTACTACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCTGCTGGAAGGGTGTT
R:
AGCTTTTGAGATTCCGTCCTGT
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]