MmuEX6027920 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140570382-140574857:+
Coord C1 exon
chr1:140570382-140570483
Coord A exon
chr1:140573595-140573678
Coord C2 exon
chr1:140574729-140574857
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCCTTATATTGCAGTCA
3' ss Score
8.7
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGTGTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAG
Seq A exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq C2 exon
ATGAAAATCACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGGGATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX1-2/6=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGACTGCCTTTTGCTGC
R:
CTGTTCTGTAGATCCCGATGGG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types