RnoEX0046240 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57458312-57470637:+
Coord C1 exon
chr13:57458312-57458413
Coord A exon
chr13:57469391-57469474
Coord C2 exon
chr13:57470509-57470637
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGCTTATATTGCAGTCA
3' ss Score
6.39
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAGAGCGAGAACGAGGTTCTAACCTGGCCTTCATGTTCCGACTGCCTTTCGCTGCGGGGAGAGTGTTCAGCATCAGTATGCTGGACACGCTGCTTTATCAG
Seq A exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq C2 exon
ATGAAAATTACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGCTGTGTTCTTCTACTGGAGATGTTCCCATTGGGATCTACAGAACAGAATCTCAGAAGCTAACTACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'36-42,'36-40,38-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTCCGACTGCCTTTCG
R:
TCTGTTCTGTAGATCCCAATGGG
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]