MmuEX6027920 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142466959-142471434:+
Coord C1 exon
chr1:142466959-142467060
Coord A exon
chr1:142470172-142470255
Coord C2 exon
chr1:142471306-142471434
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCCTTATATTGCAGTCA
3' ss Score
8.7
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGTGTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAG
Seq A exon
TCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCT
Seq C2 exon
ATGAAAATCACTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGGGATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'33-30,'33-28,34-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCGACTGCCTTTTGCTGC
R:
CTGTTCTGTAGATCCCGATGGG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: