BtaEX6067951 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27683297-27689444:-
Coord C1 exon
chr16:27689387-27689444
Coord A exon
chr16:27687548-27687612
Coord C2 exon
chr16:27683297-27683365
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTTTCTATTTAAATATTTAGGAA
3' ss Score
8.24
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATTCTGAGATCAGGGCCAATGAACTCAGGACAGCTCTGAATGAAGTGTTTTCCAAAC
Seq A exon
GAACAGACATCAAATTTGATGGATTTGACATCAACACTTGCAGAGAGATGATCAGCCTGATGGAT
Seq C2 exon
AGCAATGGGACAGGCTCCCTGGAACTGGTGGAATTCAAGACGCTCTGGCTGAAGATCCGAAAGTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'21-26,'21-24,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003627=EF-hand_1=PU(31.0=40.9)
C2:
PF0003627=EF-hand_1=PD(62.1=78.3),PF0229611=Alpha_adaptin_C=PU(18.1=73.9),PF134991=EF-hand_7=PU(5.4=21.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCTGAGATCAGGGCCAATGA
R:
CAGGTACTTTCGGATCTTCAGCC
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]