GgaEX6029112 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18845784-18847722:+
Coord C1 exon
chr3:18845784-18845841
Coord A exon
chr3:18846458-18846522
Coord C2 exon
chr3:18847654-18847722
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTCTTTTGTCTAGGAA
3' ss Score
11.06
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GACTGTGAAGTGACTGCAACTGAACTTCAAACTATTCTAAATAGGGTTTTGGTGAAGA
Seq A exon
GAAAGGATATAAGAAGTGATGGATTCAACATTAACACTTGCAGGGAGATGATCAGCCTTTTAGAT
Seq C2 exon
ACTAATGGGACTGGCACCTTGGGACTTATAGAATTCAAGACACTCTGGATGAAGATTCAGATGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.7=100)
A:
PF138331=EF-hand_8=FE(35.0=100)
C2:
PF138331=EF-hand_8=PD(28.3=73.9),PF134051=EF-hand_6=PU(6.1=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGAAGTGACTGCAACTGA
R:
CAAATACATCTGAATCTTCATCCAGA
Band lengths:
127-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]