RnoEX0016704 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100884612-100888895:-
Coord C1 exon
chr13:100888838-100888895
Coord A exon
chr13:100885656-100885720
Coord C2 exon
chr13:100884612-100884680
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTTTATCTTTTAGGCG
3' ss Score
11.06
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGCGGAGATCTCTGCCTTTGAGCTGCAGACCATCTTGAGAAGAGTTCTAGCCAAGC
Seq A exon
GCGAAGACATCAAGTCAGATGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
Seq C2 exon
GAAGATGGGAGCGGCAAGCTGGGGCTGAAGGAGTTCTACATCCTCTGGACGAAGATTCAGAAATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'26-28,'26-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGATCTCTGCCTTTGAGC
R:
GGTATTTCTGAATCTTCGTCCAGAGG
Band lengths:
121-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]