GgaEX6029105 @ galGal3
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
NA
Coordinates
chr3:18800908-18803333:-
Coord C1 exon
chr3:18803276-18803333
Coord A exon
chr3:18802092-18802156
Coord C2 exon
chr3:18800908-18800976
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTCTTACTCTTTCTTTACAGGCC
3' ss Score
11.76
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGCAGAGATCTCTGCCTTCGAGCTGCGCAACATCCTGAATAAAATCCTGGCTAAGC
Seq A exon
GCCAAGATATTAAATCTGATGGCTTTAGCATTGAGACGTGCAAAATAATGGTTGACCTGCTAGAT
Seq C2 exon
AACGATGGGAGTGGAAAACTGGGGCTGAAGGAGTTCCACACGCTCTGGACAAAGATTCAGAAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100),PF0175117=Toprim=FE(17.8=100)
A:
PF138331=EF-hand_8=FE(34.4=100),PF0175117=Toprim=FE(19.6=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF0175117=Toprim=FE(20.6=100),PF134991=EF-hand_7=PU(2.4=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCTCTGCCTTCGAGCT
R:
ATATTTCTGAATCTTTGTCCAGAGCG
Band lengths:
119-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]