MmuEX6029812 @ mm9
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:184403055-184407439:-
Coord C1 exon
chr1:184407382-184407439
Coord A exon
chr1:184404013-184404077
Coord C2 exon
chr1:184403055-184403123
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACATCCATTTTATCTTTTAGGCC
3' ss Score
10.69
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGCAGAGATCTCTGCCTTTGAGCTGCAGACCATCTTAAGAAGAGTTCTAGCCAAAC
Seq A exon
GCCAAGACATCAAGTCAGACGGCTTCAGCATCGAGACCTGTAAGATCATGGTGGACATGCTGGAT
Seq C2 exon
GAAGATGGGAGTGGCAAGCTTGGCCTGAAGGAGTTCTACATCCTCTGGACGAAGATTCAGAAATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTCTGCCTTTGAGCTGC
R:
TGGTATTTCTGAATCTTCGTCCAGA
Band lengths:
119-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: