BtaEX6067960 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012778 | CAPN2
Description
Bos taurus calpain 2, (m/II) large subunit (CAPN2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103086]
Coordinates
chr16:27830084-27834168:+
Coord C1 exon
chr16:27830084-27830141
Coord A exon
chr16:27833084-27833148
Coord C2 exon
chr16:27834100-27834168
Length
65 bp
Sequences
Splice sites
3' ss Seq
CACACTTCTTTTGATCCTAGGCC
3' ss Score
8.03
5' ss Seq
GACGTATCC
5' ss Score
0.98
Exon sequences
Seq C1 exon
GACGCAGAGATTTCTGCCTTTGAGTTGCAGACAATCCTGAGAAGAGTGCTAGCAAAGC
Seq A exon
GCCAAGATATCAAGTCCGACGGCTTTAGCATTGAGACCTGCAAAATCATGGTGGACATGCTCGAC
Seq C2 exon
TCGGATGGGAGTGGCAAACTGGGTCTGAAGGAGTTCTACATTCTCTGGACGAAGATTCAGAAATACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012778-'20-19,'20-17,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
PF138331=EF-hand_8=FE(34.4=100)
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(2.4=8.7)
Main Skipping Isoform:
ENSBTAT00000047532fB1339
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTTCTGCCTTTGAGTTGCAGA
R:
TGGTATTTCTGAATCTTCGTCCAGA
Band lengths:
119-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]