HsaEX6036937 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223544772-223551017:-
Coord C1 exon
chr1:223550960-223551017
Coord A exon
chr1:223549318-223549382
Coord C2 exon
chr1:223544772-223544850
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATTTAAATCTTTAGGAA
3' ss Score
9.43
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATTCTGAGATTACTGCCAATGCACTCAAGATACTTTTGAATGAGGCGTTTTCCAAGA
Seq A exon
GAACAGACATAAAATTCGATGGATTCAACATCAACACTTGCAGGGAAATGATCAGTCTGTTGGAT
Seq C2 exon
GAGATCTATTGGGAAACTGATTATAACCACTCGGGCACCATCGATGCCCACGAGATGAGGACAGCCCTCAGGAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697_MULTIEX3-3/7=2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(29.3=85.0)
A:
PF138331=EF-hand_8=FE(36.2=100)
C2:
PF134991=EF-hand_7=FE(28.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTACTGCCAATGCACTCA
R:
CCTTCCTGAGGGCTGTCC
Band lengths:
129-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains