BtaEX6068139 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022777 | CDC42BPA
Description
Bos taurus CDC42 binding protein kinase alpha (DMPK-like) (CDC42BPA), mRNA. [Source:RefSeq mRNA;Acc:NM_001192937]
Coordinates
chr16:30737933-30763893:-
Coord C1 exon
chr16:30763817-30763893
Coord A exon
chr16:30740872-30740955
Coord C2 exon
chr16:30737933-30738038
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCCCTGGATTCAGACT
3' ss Score
6.98
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGATCAATTTGAA
Seq A exon
ACTGTAGACTCTACTCCACTTCCAGTTCATACACCAACCTTAAGGAAAAAGGGATGCCCTGGTTCAACTGGCTTTCCATCGAAG
Seq C2 exon
CGCAAGATTCATCAGTTTTTTGTCAAATCTTTTACTACTCCCACCAAGTGTCATCAGTGTACATCTTTGATGGTGGGTTTGATAAGACAAGGCTGTTCTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022777-'29-48,'29-46,34-48=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.521 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCACCAAGACTCACAGCA
R:
AGCCTTGTCTTATCAAACCCACC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]