RnoEX6045609 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98408418-98421253:+
Coord C1 exon
chr13:98408418-98408456
Coord A exon
chr13:98419149-98419232
Coord C2 exon
chr13:98421148-98421253
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTCCCGGGATTCAGATT
3' ss Score
6.73
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CGCTCTCCGTCCTGTACTCCAGCTGGCAAAGGCAGACGT
Seq A exon
ATTGCAGACTCTGCTCCGCTTCCAGTTCACACACCAACTTTAAGGAAAAAGGGATGCCCAGCTTCAGCTGGTTTTCCACCTAAG
Seq C2 exon
CGCAAGACTCATCAGTTTTTCGTGAAGTCTTTCACTGCCCCTACCAAGTGCCATCAGTGTACCTCCTTGATGGTCGGTTTGATAAGACAGGGCTGTTCCTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841-'43-46,'43-45,47-46=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.443 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCGTCCTGTACTCCAGC
R:
CTTCGCAGGAACAGCCCT
Band lengths:
143-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]