GgaEX6028837 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13310308-13316885:+
Coord C1 exon
chr3:13310308-13310346
Coord A exon
chr3:13314672-13314752
Coord C2 exon
chr3:13316780-13316885
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGGGAATACATTCAGGTT
3' ss Score
1.99
5' ss Seq
AAGGTACTC
5' ss Score
7.46
Exon sequences
Seq C1 exon
CGCTCTCCTTCCTGTATTCCAGCTAACAAAGGCAGACGT
Seq A exon
GTTACGGATCATCCTCCTCGATCAATTCACACACCAACCATGCGGACTGCGTATATTGGATCGGGACTCTCTGCACCAAAG
Seq C2 exon
CCTAAAGCCCATCAGTTTGTAGTGAAATCATTTAATACCCCAACAAAATGCAATCAATGCACATCTCTAATGGTTGGTTTAATAAGACAGGGCTGCACTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'26-33,'26-32,28-33=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=0.815 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(59.3=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTTCCTGTATTCCAGC
R:
CTTCACAAGTGCAGCCCTGTC
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]