MmuEX0010398 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180117667-180136757:+
Coord C1 exon
chr1:180117667-180117743
Coord A exon
chr1:180134297-180134380
Coord C2 exon
chr1:180136652-180136757
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGCCTGGGATTCAGATT
3' ss Score
5.36
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTATAGAGCACCAAGACTCACAGCATTCTTTCTTGGCATTTTTGAATACGCCTACCGATGCTCTGGACCAATTTGAA
Seq A exon
ATTGCAGACTGTGCTCCACTTCCAGCTCACACACCAACCTTAAGGAAAAAGGGATGCCCGGCTTCAACTGGCTTTCCACCTAAG
Seq C2 exon
CGCAAGACTCATCAATTTTTCGTGAAGTCTTTCACTGCCCCTACCAAGTGTCACCAGTGCACCTCCTTGATGGTCGGTTTGATAAGACAGGGCTGTTCCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490_MULTIEX3-5/5=1-C2
Average complexity
C1*
Mappability confidence:
83%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.290 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(60.4=88.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCAAGACTCACAGCAT
R:
ACAGCCCTGTCTTATCAAACCG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types