BtaEX6068713 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43389418-43390710:+
Coord C1 exon
chr16:43389418-43389492
Coord A exon
chr16:43389871-43390006
Coord C2 exon
chr16:43390645-43390710
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGGCCCATCTGCAGGTC
3' ss Score
8.73
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGCTATGACCAGAGAGAAATTCCCAGAGAAAATTCCATTTAGACTAACAAGAATGCTGACCAATGCTATGGAG
Seq A exon
GTCACGGGCCTTGATGGCAACTACAGGATCACGTGCCACACCGTGATGGAGGTGCTCCGGGAGCACAAGGACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCCTGCTGAACTGGAGGCTGATGGACA
Seq C2 exon
CAAATACCAAAGGTAACAAGCGATCACGGACGAGGACAGATTCCTACTCTGCTGGCCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325-'66-70,'66-69,67-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.478
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
A:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGACCAGAGAGAAATTCCCA
R:
CTACTGACTGGCCAGCAGAGT
Band lengths:
138-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]