GgaEX0004377 @ galGal3
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4135949-4137135:-
Coord C1 exon
chr21:4137061-4137135
Coord A exon
chr21:4136428-4136563
Coord C2 exon
chr21:4135949-4136014
Length
136 bp
Sequences
Splice sites
3' ss Seq
GGCTTCTTTCTCTTCTGAAGGTG
3' ss Score
8.68
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTTGCGATGACAAGAGAGAAGTTCCCTGAGAAGATTCCATTTAGGTTAACAAGGATGCTGACAAACGCTATGGAG
Seq A exon
GTGACGGGCCTTGATGGCAATTACAGAATCACCTGTCACACAGTGATGGAAGTCCTGCGCGAGCATAAGGACAGTGTCATGGCTGTGCTAGAAGCCTTTGTATATGATCCATTATTGAACTGGAGGCTGATGGACA
Seq C2 exon
CAAATACAAAGGGCAATAAACGTTCACGAACAAGAACAGACTCCTACTCAGCCAGTCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.565
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
A:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGATGACAAGAGAGAAGTTCC
R:
ACTGACTGACTGGCTGAGTAGG
Band lengths:
138-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]