DreEX6051550 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46081537-46086961:-
Coord C1 exon
chr8:46086887-46086961
Coord A exon
chr8:46081673-46081808
Coord C2 exon
chr8:46081537-46081602
Length
136 bp
Sequences
Splice sites
3' ss Seq
CAGATTATTTCCCCACTTAGGTG
3' ss Score
6.42
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGCAATGACCAGAGAAAAATTCCCAGAGAAAATTCCTTTTAGATTAACCCGCATGTTAACCAATGCCATGGAG
Seq A exon
GTGACGGGACTGGATGGTAACTACCGTATCACATGCCACACAGTGATGGAGGTGCTCCGGGAACACAGGGACAGTGTCATGGCTGTGCTGGAGGCCTTTGTCTATGACCCGTTACTCAACTGGAGGCTTATGGACA
Seq C2 exon
CAAACACTAAAGGAAATAAGCGATCCCGGACCAGAACTGACTCCTATACTGCAGGACAGTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'57-58,'57-57,58-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.609
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
A:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGACCAGAGAAAAATTCCCA
R:
TGTCCTGCAGTATAGGAGTCAGT
Band lengths:
130-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]