HsaEX6028398 @ hg19
Exon Skipping
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:3942]
Coordinates
chr1:11172909-11174944:-
Coord C1 exon
chr1:11174870-11174944
Coord A exon
chr1:11174375-11174510
Coord C2 exon
chr1:11172909-11172974
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGTCCCATTTCTAGGTT
3' ss Score
10.53
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTGCTATGACCCGAGAGAAGTTTCCAGAGAAGATTCCATTTAGACTAACAAGAATGTTGACCAATGCTATGGAG
Seq A exon
GTTACAGGCCTGGATGGCAACTACAGAATCACATGCCACACAGTGATGGAGGTGCTGCGAGAGCACAAGGACAGTGTCATGGCCGTGCTGGAAGCCTTTGTCTATGACCCCTTGCTGAACTGGAGGCTGATGGACA
Seq C2 exon
CAAATACCAAAGGCAACAAGCGATCCCGAACGAGGACGGATTCCTACTCTGCTGGCCAGTCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793-'59-63,'59-62,61-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.487
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(27.6=100)
A:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTATGACCCGAGAGAAGT
R:
GACTGACTGGCCAGCAGAGTA
Band lengths:
140-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)