MmuEX6097884 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148549791-148551024:+
Coord C1 exon
chr4:148549791-148549865
Coord A exon
chr4:148550088-148550223
Coord C2 exon
chr4:148550959-148551024
Length
136 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTGACCTTTGTGCAGGTT
3' ss Score
8.33
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
GTCGCTATGACCAGAGAGAAATTTCCAGAAAAGATTCCATTTAGACTAACAAGAATGTTGACCAATGCTATGGAG
Seq A exon
GTTACGGGTCTGGATGGCAACTACAGAACCACATGCCACACCGTGATGGAAGTGCTCCGGGAACACAAGGACAGTGTCATGGCTGTGCTGGAAGCCTTTGTCTATGACCCACTGCTCAACTGGAGGCTGATGGACA
Seq C2 exon
CAAATACCAAAGGCAATAAGCGGTCCCGGACAAGGACAGACTCCTACTCTGCCGGCCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'91-99,'91-98,92-99
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.478
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(9.6=100)
A:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTATGACCAGAGAGAAA
R:
TACTGACTGGCCGGCAGAGTA
Band lengths:
140-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types