BtaEX6068751 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43284979-43288635:+
Coord C1 exon
chr16:43284979-43285254
Coord A exon
chr16:43285339-43285447
Coord C2 exon
chr16:43288449-43288635
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCCTTCCTGTCTCAGGTG
3' ss Score
11.84
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGCCTGAGAGAAGAAATGGAAGAAATCACACAGCAGCAGTTGGTCCATGACAAGTACTGCAAGGATCTCATGGGTTTTGGAACGAAACCCCGTCACATCACCCCCTTCACCAGTTTCCAGTCCGTGCAGCCCCAGCAGTCAAATGCCTTGGTGGGGCTGCTGGGGTACAGCTCTCACCAAGGCCTCATGGGCTTTGGGGCCTCCCCCAGCCCAGCAAAGTCCATGCTGGTGGAAAGTCGCTGCTGCAGGGACTTGATGGAGGAGAAATTTGATCAG
Seq A exon
GTGTGCCAGTGGGTGCTGAAGTGCAGGAATAGCAAGAACTCGCTGATCCAAATGACAATCCTTAATTTGTTGCCCCGCTTGGCTGCCTTCCGACCTTCTGCCTTCACAG
Seq C2 exon
ATACCCAGTACCTCCAGGATACCATGAACCATGTCCTGAGCTGCGTCAAGAAGGAGAAGGAACGGACAGCAGCCTTTCAAGCCCTGGGGCTACTTTCTGTGGCTGTGAGGTCTGAGTTCAAGGTCTATTTACCTCGTGTGCTGGACATCATCCGAGCAGCCCTGCCCCCTAAGGACTTCGCCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAAACCCCGTCACATCA
R:
CTCCTTCTTGACGCAGCTCAG
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]