MmuEX6097917 @ mm10
Exon Skipping
Gene
ENSMUSG00000028991 | Mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:MGI Symbol;Acc:MGI:1928394]
Coordinates
chr4:148458627-148462973:+
Coord C1 exon
chr4:148458627-148458902
Coord A exon
chr4:148458984-148459092
Coord C2 exon
chr4:148462787-148462973
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTGTCCTTGCTCTCTCAGGTG
3' ss Score
11.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGTCTGAGAGAAGAGATGGAGGAGATCACCCAGCAGCAGCTGGTGCATGACAAGTACTGCAAAGACCTCATGGGCTTCGGGACCAAGCCTCGGCACATCACGCCCTTCACCAGTTTCCAGGCTGTGCAGCCCCAGCAGCCGAACGCCTTGGTGGGACTGCTGGGGTACAGCTCCCCTCAAGGCCTGATGGGATTTGGGACGTCCCCCAGCCCTGCCAAGTCCACTCTGGTGGAAAGCCGCTGTTGCAGAGACTTGATGGAAGAGAAATTTGATCAG
Seq A exon
GTGTGCCAGTGGGTGCTGAAGTGCAGGAGCAGCAAGAACTCGCTGATCCAGATGACAATCCTTAACCTGCTGCCCCGCCTGGCTGCATTCCGACCGTCCGCCTTCACAG
Seq C2 exon
ATACCCAGTACCTCCAGGACACCATGAACCATGTCCTGAGCTGTGTCAAGAAGGAGAAGGAACGGACTGCGGCGTTCCAGGCCCTGGGGCTGCTTTCTGTGGCCGTGAGGTCGGAGTTTAAGGTCTACTTGCCCCGTGTACTTGACATCATCCGAGCAGCGCTTCCTCCAAAGGACTTTGCCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028991-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACGCCCTTCACCAGTTTC
R:
GCAGTCCGTTCCTTCTCCTTC
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types