DreEX6051522 @ danRer10
Exon Skipping
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46294633-46298266:-
Coord C1 exon
chr8:46297991-46298266
Coord A exon
chr8:46296829-46296937
Coord C2 exon
chr8:46294633-46294816
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGCTGTTCTATCAGGTG
3' ss Score
8.45
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
CGTATGAGAGAGGAGATGGAGGAGATCACGCAGCAGCAGTTGGTTCATGATAAGTACTGTAAGGAGTTGATGGGTTTCAGCACTAAGCCTCGTCACATCACGCCCTTCACCAGTTTTCAGTCCGTTCAGCCGCAGCAGTCTAACGCTCTGCTGGGGCTGCTGGGTTACAGCACACCTCAGGGCTTCTTAAGTTTTGGAGCTGCACCTGTTCCCTCGAAAAGCACACTGGTGGAGAGCCGCTACTGCAGAGAACTGATGGAGGAGCGCTTTGACCAG
Seq A exon
GTGTGCCGTTGGGTGCTGAAATACAGGACCAGTAAGAATCCTCTAATCCAGATGACAATCTTAAACCTACTGCCTCGACTTGCTGCCTTCCAGCCTCACACTTTCACTG
Seq C2 exon
ATCAGTATTTGCAGGACACTATGGGGCACCTGCTGGGCTGCCTAAAAAAAGAAAAGGAGCGGACGGCAGCATTTCAAGCGCTGGGGCTACTGGTGGTGGCTGTGAGGGCTGATATTCAGCCATACCTAAGCAAGATCCTGGAGATTATCAAAGCTGCATTGCCACCGAAAGACTTTGCGCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCCCTCGAAAAGCAC
R:
AAGTCTTTCGGTGGCAATGCA
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]