GgaEX1037542 @ galGal3
Exon Skipping
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4188688-4190389:-
Coord C1 exon
chr21:4190114-4190389
Coord A exon
chr21:4189700-4189808
Coord C2 exon
chr21:4188688-4188874
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCCAATCCATATCCTTTCAGGTG
3' ss Score
9.1
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CGCCTTAGAGAGGAGATGGAGGAGATCACTCAGCAGCAGCTCGTGCATGACAAGTACTGCAAAGACCTGATGGGCTTTAGTACCAAACCTCGCCACATCACTCCCTTCACTAGCTTCCAGTCTCTTCAGCCCTCTCAGTCAAATGCTTTGGCTGGTCTTCTGGGTTACAATGCCCACCAAGGAATCATGGGTTTTGCAACGTCACCTATGCCGGCAAAGTCTACGTTGGTAGAAAGTCGATGCTGCAGAGATCTAATGGAGGAGAAGTTTGATCAG
Seq A exon
GTGTGCCAGTGGGTTCTTAAGTGCAGAACCAGCAAAAATTCTTTGATCCAGATGACAGTTCTCAATCTGCTACCACGGCTGGCAGCTTTCCGTCCTTCAGCATTCACAG
Seq C2 exon
CTGATCAGTATCTTCCGGACACCATGAACCATGTTCTCAGCTGTGTGAAGAAGGAGAAGGAGAGAACAGCAGCCTTCCAGGCCTTGGGTTTGCTTTCTGTGGCTGTCAGATCTGAGTTTCAAGCCTACCTGCCAAAAGTCCTTGAAATAATAAAAGCAGCTCTTCCACCAAAGGACTTTGCTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGCCGGCAAAGTCTACG
R:
CCTTTGGTGGAAGAGCTGCTT
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]