RnoEX0056476 @ rn6
Exon Skipping
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165273679-165278036:+
Coord C1 exon
chr5:165273679-165273954
Coord A exon
chr5:165274037-165274145
Coord C2 exon
chr5:165277850-165278036
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTGTATCCTTGCTCTCTCAGGTG
3' ss Score
10.6
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CGTCTGAGAGAGGAGATGGAGGAAATCACCCAGCAGCAGCTGGTACATGACAAGTACTGCAAAGACCTAATGGGCTTTGGGACAAAGCCTCGGCACATCACTCCCTTCACCAGCTTCCAGGCTGTGCAGCCCCAGCAGTCAAACGCCTTGGTGGGACTGCTGGGGTACAGCTCCCACCAAGGCCTAATGGGGTTTGGGGCTTCCCCCAGCCCTACAAAGTCCACTCTGGTGGAAAGCCGTTGTTGCAGAGACTTGATGGAAGAGAAATTTGATCAG
Seq A exon
GTGTGCCAGTGGGTGCTGAAATGTAGGAGCAGCAAGAACTCACTGATCCAAATGACAATCCTTAATCTGTTGCCCCGCTTGGCTGCATTCCGACCGTCTGCCTTCACAG
Seq C2 exon
ATACCCAGTACCTGCAAGACACCATGAACCATGTCCTGAGCTGTGTCAAGAAGGAAAAGGAACGGACCGCAGCGTTCCAGGCCCTAGGGCTGCTTTCTGTGGCGGTGAGGTCCGAGTTTAAGGTCTACCTGCCCCGAGTACTTGACATCATCCGAGCAGCCCTGCCTCCAAAGGACTTTGCCCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAATGGGGTTTGGGGCTTCC
R:
TGATGTCAAGTACTCGGGGCA
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]