BtaEX6068999 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47663318-47667123:-
Coord C1 exon
chr16:47666882-47667123
Coord A exon
chr16:47663992-47664103
Coord C2 exon
chr16:47663318-47663410
Length
112 bp
Sequences
Splice sites
3' ss Seq
CCCTTGGCTTCTCCCAGCAGGAA
3' ss Score
9.23
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
TGGGAGGTGGTGGTTCAAGTTGAGGACGACGGGGATGGCGATTATGATTCTGAAACTGAGACTGTGCCAACCAAGAGGAAAGCAAACGTAATCAGAAAGCCTTGTGCTGCTGAGCCGGCCCGGAGCGTAGGTTCCCTGGCAGCCGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCAGTTGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTACCTAAAAGTCCACAACAG
Seq A exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
Seq C2 exon
GTCTTCACGTGCTCTGTGTGCCAGGAGACGTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCCCACACGGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735-'4-7,'4-4,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.4)
A:
PF134651=zf-H2C2_2=PD(72.0=47.4)
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGTTGAGGACGACGGG
R:
GCACACAGAGCACGTGAAGAC
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]