GgaEX0000591 @ galGal4
Exon Skipping
Gene
ENSGALG00000000637 | ZBTB48
Description
zinc finger and BTB domain-containing protein 48 [Source:RefSeq peptide;Acc:NP_001038107]
Coordinates
chr21:573975-576557:-
Coord C1 exon
chr21:575813-576557
Coord A exon
chr21:574532-574643
Coord C2 exon
chr21:573975-574067
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTGCGTTTGTGTCTCCCCAGGAA
3' ss Score
11.48
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ACCTTCCAGCTGCTGCTCGACTTCTTTTACACCGGGCGCCTGGCGCTGACGGCGCACAACCGCGCCCGCCTGCTCGCCGCCGCCGAGCTGCTGGGTGTGCCGGACGCCGTGGCTCTGTGCCGCGCATTCCGCCCCGCCACCGCCCGGCAGCGCCCCCGCCGCGCCCCCGGCCCCGCGTTGCACCCCGCCGAGCCGCCCGAGGTCCTCAGTCCGGCGGTGCCGGAGAGGGAGCGCCAAGCGGGGCGGCCCGGCCCGGAAAGCGCAGTGATCGTGCCCGTTCCCCCGCCCGTGAGCTCTCCCCCGGCGGCGACGGGCGGCGGCGGGACCGCGGTCAGCGACGCGGAGCCCCTCCCGGAGAAGAAGGCGCTGCGCAGTAAAGGGAAGCCCCCCGCCGGCGGCGCGGGGGCGGCAGGGAGCAAGAAAGGCGCAGCGGTGCCCGTGGAGTGCCCCACGTGTCATAAAAGCTTCCTCAGCAAATACTACCTTAAAGTGCACAACAG
Seq A exon
GAAACACACTGGAGAGAAGCCATTTGAATGCTCTAAATGTGGTAAATGTTATTTTAGAAAAGAGAATCTCCTGGAGCACGAAGCCAGAAATTGCATGAGCCGAACTGAGCAG
Seq C2 exon
GTTTTCACGTGCTCTGTCTGCCAGGAGGTGTTTAAGAGGCGGATGGAACTGCGGCTCCACATGGTGTCACACACCGGGGAGATGCCCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637-'2-3,'2-0,3-3
Average complexity
S
Mappability confidence:
88%=67=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=43.1),PF134651=zf-H2C2_2=PU(24.0=2.5)
A:
PF134651=zf-H2C2_2=PD(72.0=47.4)
C2:
PF0009621=zf-C2H2=WD(100=74.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCGTGCCCGTTCCC
R:
GGCAGACAGAGCACGTGAAAA
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]