RnoEX0100558 @ rn6
Exon Skipping
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169194087-169198493:-
Coord C1 exon
chr5:169198246-169198493
Coord A exon
chr5:169194778-169194889
Coord C2 exon
chr5:169194087-169194179
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGGCCTCTCTTCCTGGCAGGAA
3' ss Score
9.3
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAG
Seq A exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
Seq C2 exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.2)
A:
PF134651=zf-H2C2_2=PD(72.0=47.4)
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Skipping Isoform:
ENSRNOT00000012745fB16770
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTTGAGGACGACAGGGA
R:
TGGCATACGGAGCATGTGAAG
Band lengths:
257-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]