MmuEX0052693 @ mm9
Exon Skipping
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151396136-151400128:-
Coord C1 exon
chr4:151399887-151400128
Coord A exon
chr4:151396805-151396916
Coord C2 exon
chr4:151396136-151396228
Length
112 bp
Sequences
Splice sites
3' ss Seq
GTGGCCTCTCTTCCTGGCAGGAA
3' ss Score
9.3
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
TGGGAAGTGGTGGTCCAAGTGGAGGACGACAGGGACGGTGATTACGTATCTGAGCCTGAGACTGTGCTAACCAGAAGGAAGTCAAAAGTGATTAGAAAACCCTGTGCAGCCGAGCCAGCCCTGGGTGCGGGTTCTCTCACAGCCGAGCCCACTGACAGCAGAAAAGGTGCAGCCGTTCCGGTCGAATGTCCCACATGTCACAAAAAGTTCCTCAGCAAATATTACCTGAAAGTCCACAACAG
Seq A exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTCCGCAAGGAGAATCTCTTGGAACATGAAGCCAGGAATTGCATGAACCGCTCAGAACAG
Seq C2 exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGACGGAGGATGGAGCTGCGCTTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-'6-7,'6-4,7-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.461 A=0.088 C2=0.169
Domain overlap (PFAM):
C1:
PF100834=DUF2321=PU(41.1=45.7),PF145221=Cytochrome_C7=PU(47.1=40.7),PF134651=zf-H2C2_2=PU(24.0=7.4)
A:
PF100834=DUF2321=FE(41.1=100),PF145221=Cytochrome_C7=PD(51.4=94.7),PF134651=zf-H2C2_2=PD(72.0=47.4)
C2:
PF134651=zf-H2C2_2=PU(62.5=48.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACAGGGACGGTGATTAC
R:
CTGGCATACGGAGCATGTGAA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: