BtaEX6069000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47662909-47664103:-
Coord C1 exon
chr16:47663992-47664103
Coord A exon
chr16:47663318-47663410
Coord C2 exon
chr16:47662909-47662995
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCTCATGCTGCCAGGTC
3' ss Score
8.21
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
Seq A exon
GTCTTCACGTGCTCTGTGTGCCAGGAGACGTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCCCACACGGGGGAGATGCCCTACAAG
Seq C2 exon
TGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACCTGCAGAGCCACATGATCAAGCTGCACGGAGCCCCCAAGCCCCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.034
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
PF134651=zf-H2C2_2=PU(62.5=48.4)
C2:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCTTTGAGTGTGCCA
R:
CTCCGTGCAGCTTGATCATGT
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]