DreEX0086089 @ danRer10
Exon Skipping
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022155-25022626:-
Coord C1 exon
chr23:25022515-25022626
Coord A exon
chr23:25022323-25022415
Coord C2 exon
chr23:25022155-25022241
Length
93 bp
Sequences
Splice sites
3' ss Seq
AAATTTTGGGTTCGTGCCAGGTG
3' ss Score
6.55
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGACACACTGGAGAAAAGCCGTTTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTG
Seq A exon
GTGTTTTCATGTTCAAAATGTAGCATGACCTTTAAAAAGCGGCAAGAGCTGCGTCATCACACAGTCATGCACACAGGAGTGATGCCCAATAAG
Seq C2 exon
TGCACGTCGTGCCCTGAGCAGTTCATGCAGAAGAGAGACCTCAAGATCCACATGATTAAAGTCCATGGAGCTCCCAAACCACATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.129 C2=0.034
Domain overlap (PFAM):
C1:
PF041477=Nop14=PD(1.5=7.9),PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
NO
C2:
PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAAATGTGGGAAGTGCT
R:
ATGTGGTTTGGGAGCTCCATG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]