RnoEX0100556 @ rn6
Exon Skipping
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169193668-169194889:-
Coord C1 exon
chr5:169194778-169194889
Coord A exon
chr5:169194087-169194179
Coord C2 exon
chr5:169193668-169193754
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTGCCCCTCACACTGCCAGGTC
3' ss Score
8.4
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
Seq A exon
GTCTTCACATGCTCCGTATGCCAGGAGACCTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
Seq C2 exon
TGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAGCTGCATGGAGCCCCTAAACCCCACGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595-'7-10,'7-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.065 C2=0.034
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
PF134651=zf-H2C2_2=PU(62.5=48.4)
C2:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCCTTCGAGTGTCCCA
R:
GGCTCCATGCAGCTTGATCAT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]