GgaEX0000593 @ galGal4
Exon Skipping
Gene
ENSGALG00000000637 | ZBTB48
Description
zinc finger and BTB domain-containing protein 48 [Source:RefSeq peptide;Acc:NP_001038107]
Coordinates
chr21:573405-574643:-
Coord C1 exon
chr21:574532-574643
Coord A exon
chr21:573975-574067
Coord C2 exon
chr21:573405-573491
Length
93 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTCCTTCTCTTGCAGGTT
3' ss Score
12.98
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAAACACACTGGAGAGAAGCCATTTGAATGCTCTAAATGTGGTAAATGTTATTTTAGAAAAGAGAATCTCCTGGAGCACGAAGCCAGAAATTGCATGAGCCGAACTGAGCAG
Seq A exon
GTTTTCACGTGCTCTGTCTGCCAGGAGGTGTTTAAGAGGCGGATGGAACTGCGGCTCCACATGGTGTCACACACCGGGGAGATGCCCTATAAG
Seq C2 exon
TGCTCCTCCTGCGTGCAGCAGTTCATGCAGAAGAAGGACCTGCAGAACCACATGATAAAGTTGCATGGCGCACCAAAGCCCCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637-'3-5,'3-3,6-5
Average complexity
C1
Mappability confidence:
100%=83=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(72.0=47.4)
A:
PF0009621=zf-C2H2=WD(100=74.2)
C2:
PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACACACTGGAGAGAAGCCA
R:
TCATGTGGTTCTGCAGGTCCT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]