BtaEX6069618 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013191 | AGRN
Description
agrin [Source:HGNC Symbol;Acc:HGNC:329]
Coordinates
chr16:52686501-52687430:-
Coord C1 exon
chr16:52687206-52687430
Coord A exon
chr16:52686893-52687117
Coord C2 exon
chr16:52686501-52686707
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTCCATCTTCCTGCCCCCAGACC
3' ss Score
10.55
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GGACCCGGGACCCCTGCTCCAATGTCACCTGCAGCTTTGGCAGCACCTGTGTGCCTTCTGCGGATGGACTGACAGCCACGTGCCTGTGCCCTGCCACGTGCCTGGGGGCCCCGGAAGGCCCTGTGTGCGGCAGCGACGGCAGTGACTACCCCAGCGAGTGCCAGCTCTTACGCCACGCCTGTGCCCACCAAGAGAACATCTTCAAGAAGTTCGACGGTCCTTGCG
Seq A exon
ACCCCTGCCAGGGCTTCCTCAGTGACCTGAGCCGTACCTGCCGTGTGAACCCACGCACGCGGCGGCCGGAGATGCTCCTGCGACCAGAGAGCTGCCCTCCCCGTGGGACACCTGTGTGTGGGGACGACGGGGTTACTTACGATAATGACTGCGTCATGGGCCGAACAGGGGCTGCTCAAGGCATCCTCCTGCAGAAAGTGCGCTCTGGCCAGTGCCAGCCTCGAG
Seq C2 exon
ACCAGTGCCCGGAGCCGTGCAGATTCAATGCCGTCTGCCTGTCCCGCCGAGGCCGCCCCCGCTGTTCCTGCGACCGCGTCGTCTGTGACGGGGCCTACAGACCTGTGTGTGCCCATGACGGGCACACGTATGACAATGACTGCTGGCGCCAGCAGGCCGAGTGTCAGCAGCAGCGTAGCATTCCCATGAAGCACCAGGGCCCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013191-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=51.3)
A:
PF0005016=Kazal_1=WD(100=72.4)
C2:
PF0005016=Kazal_1=WD(100=68.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCGGATGGACTGACAG
R:
ATTGTCATACGTGTGCCCGTC
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]