RnoEX6024920 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173603706-173604590:-
Coord C1 exon
chr5:173604366-173604590
Coord A exon
chr5:173604050-173604274
Coord C2 exon
chr5:173603706-173603912
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCTCTTGGACTTTAGATC
3' ss Score
8.44
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GGTCCCGGGACCCCTGTGCCAACGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCGGCTGACGGACAGACTGCCTCATGTCTGTGTCCTACAACCTGCTTCGGGGCCCCTGATGGCACAGTGTGTGGCAGTGACGGTGTTGACTACCCTAGTGAATGCCAGCTGCTTAGTCATGCCTGTGCCAGCCAGGAGCACATCTTCAAGAAGTTCAATGGTCCTTGTG
Seq A exon
ATCCCTGCCAGGGCAGCATGTCAGACCTGAACCACATTTGCCGTGTGAACCCACGTACACGGCACCCAGAAATGCTTCTGCGGCCTGAGAACTGCCCTGCCCAGCACACGCCTATCTGTGGAGATGATGGGGTCACCTATGAAAACGACTGTGTCATGAGCCGTATAGGTGCAACCCGTGGCCTGCTTCTCCAGAAAGTACGCTCTGGTCAATGCCAAACTCGAG
Seq C2 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCCGTATGCCTGTCCCGCCGTGGCCGTCCCCACTGTTCCTGCGATCGTGTCACCTGTGATGGGTCTTACAGGCCTGTGTGTGCCCAAGATGGGCACACATACAACAATGACTGTTGGCGCCAACAGGCTGAGTGTCGACAACAGCGGGCCATTCCTCCCAAGCACCAGGGCCCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205-'15-8,'15-7,17-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=68.4)
A:
PF0005016=Kazal_1=WD(100=73.7),PF0005016=Kazal_1=PU(2.8=2.6)
C2:
PF0005016=Kazal_1=PD(95.8=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCTGCAGTTTCGGTAG
R:
CCATCACAGGTGACACGATCG
Band lengths:
294-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]