GgaEX1007039 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2718397-2720185:-
Coord C1 exon
chr21:2719961-2720185
Coord A exon
chr21:2718692-2718916
Coord C2 exon
chr21:2718397-2718603
Length
225 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTTGCTCCATATAGACC
3' ss Score
7.87
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GCTCCAAGGACCCCTGTGCAGAGGTGACGTGCAGCTTTGGCAGCACGTGCGTCCGCTCTGCAGATGGCCAGACGGCCAGGTGTGTGTGCCCCGCATCCTGCAGCGGTGTGGCTGAGAGCATCGTCTGCGGCAGTGATGGCAAGGACTACCGCAGTGAGTGCGACCTCAACAAGCACGCCTGTGACAAGCAGGAGAATGTCTTCAAGAAGTTTGATGGAGCCTGCG
Seq A exon
ACCCCTGTAAGGGCATCCTCAACGACATGAACCGTGTGTGCCGGGTGAACCCCCGCACCCGCCGGGTGGAGCTGCTCTCCCGCCCCGAGAACTGTCCCTCAAAGAGGGAGCCAGTGTGCGGTGACGATGGGGTGACGTATGCCAGTGAGTGTGTGATGGGGCGCACGGGGGCCATCCGGGGGCTGGAGATCCAGAAGGTGCGCTCTGGGCAGTGCCAGCACCAGG
Seq C2 exon
ACAAATGCAAGGATGAATGCAAGTTCAATGCTGTCTGCCTGAACCGCCGTGGCACGGCGCGCTGCTCCTGCGACCGCATCACTTGTGATGGCACCTACCGGCCTGTCTGTGCCCGCGACAGCCGCACCTACAGCAACGACTGTGAGCGGCAGAAAGCCGAGTGCCACCAGAAAGCTGCCATCCCAGTGAAGCACAGCGGACCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=73.7)
A:
PF0005016=Kazal_1=WD(100=68.4)
C2:
PF0005016=Kazal_1=WD(100=68.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGATGGCAAGGACTACC
R:
CTGTGCTTCACTGGGATGGC
Band lengths:
292-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]