DreEX0012136 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23815075-23831357:+
Coord C1 exon
chr23:23815075-23815299
Coord A exon
chr23:23827731-23827955
Coord C2 exon
chr23:23831151-23831357
Length
225 bp
Sequences
Splice sites
3' ss Seq
CTTCTCACTCTCATCCTCAGATC
3' ss Score
10.23
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCCTCAAGGACCCGTGCAGTGAGGTAACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCGGATGGTCTGTCCGCCAAGTGTATGTGTCCTCTGAGCTGTGAAAACGTCCCCAAGCATGTGGTGTGTGGCAGTGACGGCCTGGACTACCAAAGCGAATGTGAACTCAACATGAAGGCCTGCGCCACTCAGAAGAACATCCGTGTGCATCACCAGGGCCGCTGCG
Seq A exon
ATCCTTGCAGTGACACTCTGAACAGCTTAAGCACAGCCTGTCGAGTCAACCCAAAGACCTACCAGCAGATTACCTTTGCCCCGGCTGAGTCTTGTCCGCCTGACGAAATGCCCATCTGTGCCAGCGACGGACACACCTACGAGAGCATGTGTCAGATGGAGCGCACTGCCCTGAAGAACAACCTGGAGCTCAAAAAGGTCTCTTTAGGCAGCTGCAAGGAAAAAG
Seq C2 exon
GGGGCTGCCCGAATGGTTGTAAGTTCAACGCCATATGTTTGCTGGATAATGGAGAGTTTCGGTGCTCCTGCGATCCCATACAATGCGACGGCACGTACAAGCCCCTGTGCGGAAAGGATGGCAAGACATACCCCAACGACTGCGAGAGGAAACTGCAGGAATGCCGGACCCAAAAAGACATCCCTGTCAAACAACAAGGGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=56.6)
A:
PF0764810=Kazal_2=WD(100=53.9)
C2:
PF0005016=Kazal_1=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGTCCGCCAAGTGTATG
R:
TGGGGTATGTCTTGCCATCCT
Band lengths:
295-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]