BtaEX6069993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61712841-61718623:+
Coord C1 exon
chr16:61712841-61712946
Coord A exon
chr16:61715732-61715823
Coord C2 exon
chr16:61718594-61718623
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTAATAATTTTAGGAA
3' ss Score
8.5
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTTAAATCAACATCAAATAAGAACGTGTCTGTAGTAGGATGGATGGTGATGATGGCTGATGACCCAGAACATCCGGATCTCTTCTTGCTTACTGACTCTGAGAAAG
Seq A exon
GAAATTCGTACAAGTTTCAAGCAGGCAGTAGGATGAATGCAATGCTGTGGTTCAAGCATTTGAGTGCAGCCTGCCAAAGCAACAAACAACAG
Seq C2 exon
GTTCCTACAAACTTGATGACTTTTGAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718-'37-37,'37-34,39-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
PF0016924=PH=PD(22.3=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACATCAAATAAGAACGTGTCTGT
R:
ACTCAAAAGTCATCAAGTTTGTAGGA
Band lengths:
128-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]