GgaEX6043815 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6605645-6610826:-
Coord C1 exon
chr8:6610721-6610826
Coord A exon
chr8:6609509-6609600
Coord C2 exon
chr8:6605645-6607295
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCCTACCTTTCTCTCTTAGGAA
3' ss Score
11.28
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TTCAAATCCACCCCGAGCAAGAATGTGTCAGTCGTGGGCTGGATGGTGATGATGGCAGACGACCCTGAACATCCAGATCTCTTCTTATTGACAGATTCGGAGAAAG
Seq A exon
GAAATTCATACAAATTTCAAGCTGGAAATAGAATGAATGCGATGCTCTGGTTTAAACACCTGAGTGCTGCCTGCCAAAGCAACAGACAACAG
Seq C2 exon
GTTCCTGCCAACTTGATGACCTTTGAATAGCAGGCTAGTTCAAAACAAAACAACGAAAAAAGAACAATTTGAACCATCTCATAAATGAGAATGAGGTCCTGACGGAAAATGTGCCAGCTGCATTCTGTGCCAGAACGGAGCCTGTCAAGCCGATCTCCTGAACTCTGGAGCCCTGAACAAAACAAGTAATGGCTGGGGATTAGGGTCCCCCGAATGAAAAATGGAGTTGCAACATGAATTGCCATGGACCATGCTTTGTTATATCCTCTGAACTGACCTGTGGAAACCACTGCCTTAAAGAGTGAAAGGAAAAACAACAATGAAACACCAAATAGTGTGTGTGAAACTTCTGGCGGTGCTGTGCTTGAGTTAAATAGATTGTAGCCTGTTTGAGTTTCTTTTAACTTTGTACTAACTTTGAAAATAACTCACCTTTGTAGGTATTCTTAAGGAAGCAAGTAAATTGGTATTTAAGAGTTGTATCAAAAGCTATGTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'29-33,'29-32,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
PF0016924=PH=PD(22.3=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGTGATGATGGCAGACG
R:
CTGGCACATTTTCCGTCAGGA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]