RnoEX6044899 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74422944-74428275:-
Coord C1 exon
chr13:74428170-74428275
Coord A exon
chr13:74426037-74426128
Coord C2 exon
chr13:74422944-74423172
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTTGGCAATTATAGGAA
3' ss Score
6.6
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTCAAATCAACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCCGATGATCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCGAGAAAG
Seq A exon
GAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGGTTTAAACACTTGAGCGCGGCCTGCCAGAGTAACCGGCAACAG
Seq C2 exon
GTTCCTACAAACTTGATGACTTTTGAGTAAAAGCCTGAGAAAGAAGAGGAGCGCTGTTCCCGTGTAGAGCCAGGACCTGCCGAGAGCCCCAGCCGCACCATCCCGTGCCAGGAAGAGCCCCCAGGCTCCAGCCCAGCCTCCGGAGCTCAGAACCAAAAGCACTAATTTCAGGGAATGAAGTGAGATGTTCCCAGAGAAAAACAATGGAGTTGCAAAACAAACTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'43-37,'43-35,45-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
PF0016924=PH=PD(22.3=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTGACTGACTCCGAGAA
R:
TTTTGGTTCTGAGCTCCGGAG
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]