MmuEX6028499 @ mm10
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:156804166-156813543:-
Coord C1 exon
chr1:156813438-156813543
Coord A exon
chr1:156811445-156811536
Coord C2 exon
chr1:156804166-156809193
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTTGGCAATTACAGGAA
3' ss Score
6.66
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTCAAATCAACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCTGACGACCCAGAGCATCCAGACCTCTTTCTGCTGACTGACTCCGAGAAAG
Seq A exon
GAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGGTTTAAACACTTGAGCGCGGCCTGCCAGAGTAACAAGCAACAG
Seq C2 exon
GTTCCTACAAACTTGATGACTTTTGAGTAAACGCCTGAGACAGAAGAGGAGTGCTATTGTTCCCGTGTGGAACCGGGACCTGCCGAGAGCCCCAGCCGCACCATCCCGTGCCAGGAAGAGCCCCCAGGCTCCAGCCCAGCCTCCGGAGCTCAGAACCAAAAGCACTAATTTCAGGGAATGAAGTGAGATGTTCCCAGAGAAAAACGATGGAGTTGCAAAGCAAACTGCCATGAACTTCGCTTCTTCTCTCCGAACTGACCTGTGGAAGCCACTGCCTTAACAGAGTGCGAGGAGAGCCGACACCAAATAGTGTGTGTGCGTCTTCTGGCGGTGCTGTGCTTGGAATAAATTGTAGCTAATTTGCATTTCTTTTAACTTTGTACTAATTTTGGAGGGGAAACCATCTTTTTTAGATACACTTTAAAATGGAAAAACATTTCTTATGGATTCCATCAGGAGCTGTTTTAGGTGCAGTGAGAAATACCCTGCAGGTTCTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594-'52-59,'52-57,59-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
PF0016924=PH=PD(22.3=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACTGACTCCGAGAAAG
R:
TTTTGGTTCTGAGCTCCGGAG
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types