DreEX0060669 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16033445-16043737:-
Coord C1 exon
chr20:16043632-16043737
Coord A exon
chr20:16041243-16041334
Coord C2 exon
chr20:16033445-16038720
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTATGTTGCTGTGCCCTCAGGAA
3' ss Score
8.46
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTCAAGTCCACCGCCAGCAAAACTGTTTGTGTTTTGGGCCTAATGGCCATGATGGCAGACGATCCGGAACATCCTGACGTCTTCCTGCTGACCGACTCTGAGCACG
Seq A exon
GAAACTCGTACAAGTTCCAGGCGGGGAACAGAATGAACGCTCTGCTGTGGTTCAAACACCTGAGTGCAGCTTGTCAAAGCAACAGGCAGCAG
Seq C2 exon
GTGCCCGCAAATCTAATGTCCTTCGAATAAGCGGGACTAGGAAGAATCAGAGACTGAGAGCTCACGAGCGACTGGATAACAGGAGAGCTGAGGACCATAAGGACCGCTGGGGGTCAGAGACGAATAAAAAAAAAAAAAAAATGAGCAAAAGACTCAAGTTTGTGTGTGCGATGGAGCTTTTCCACTGCCATCACCCAGCCTGAAGCCCACAGCAAACTCCTGGAGCACCACTGCCTTAACAAGCAGAGTCTAAGTGTGTGTATGTGTATGTGAAAGAGCCTGAAAGTCCTTGATTTATTTGATTTACATCTCCTATCTGATTTCCAGCAAGCAAGGAACTTTTTGGGCTCTTCTGGAGTTCGTTTACACCTTCTTTAGCTCACAGTATGTATGAACTGGTTGTGAATCTAATCAGCGCTTCTCGTCGTTTGACAAAACACACACCCAGGAAACTCCTCCAAACAAATCCTCGCGTATTGTGTTTCCGCACACTCTAGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519-'21-25,'21-24,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
PF0016924=PH=PD(22.3=80.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGCAAAACTGTTTGTGT
R:
TCCTGTTATCCAGTCGCTCGT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]