BtaEX6070012 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014006 | TOR3A
Description
Bos taurus torsin family 3, member A (TOR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001080376]
Coordinates
chr16:61858195-61860811:+
Coord C1 exon
chr16:61858195-61858501
Coord A exon
chr16:61859830-61859943
Coord C2 exon
chr16:61860546-61860811
Length
114 bp
Sequences
Splice sites
3' ss Seq
CACAGCTCCTCCTCTTCCAGGCT
3' ss Score
8.13
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GGGAAGGCCCAGCGGTGGAGGCCTGCTGCCGGCCTGGCCATGCTTGGGGGCACAGAGCGTCTGCTCTGGCTCCTGCTTCTGTCGCTGCTGCTGCCGCCCCCGAGTGCATGGGGACACGGCGGCCAGGCGAGGCCGAGGGAGGGGACCGAGGAGGCGGGCTCGGCCAGGGCTTGGCTGGCCTTCCAGGGCCTGCGGGAGCGACTGAGGGCGGCCGGCGCGCTCTCCAGACGCTACTGGGCTCTCTTCAGCTGCCGCGTGTGGCCTGAGGGCTGTGGGGAGGATGAGGAGGCGTCGGCGCGGCCCCCAG
Seq A exon
GCTGGAGCCTTGCCCTGCTGGGCCAGCAGTACCTGGATATCTTGAGCACGTGGTCCTGCAGCTTCTGGGACTGCTGCGACAGAGGGGACTGCAAGATCATCAACAACTTCACAG
Seq C2 exon
GCCTCAAGGCGGACCTGCGCGTGCGCCTGCACGGCCAGCACCTAGCCCGGGAGCTGGTCCTGACGGCGGTGAGGGACTACTTAGAGAAGCCCCGGCCGGACAAGGCCCTGGCTCTGTCGTTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCGCGGATGCTGGCGGAAAACCTGTACCAGGACGGGCTGAGGAGCGACTGTGTCAAGGTGTTCATCTCTACGTTGCACTTCCCTCACCCCAAGAATGTGGACCTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014006-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF063096=Torsin=PU(14.7=48.7)
C2:
PF063096=Torsin=FE(68.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGGCTCTCTTCAGCTGC
R:
TACAGGTTTTCCGCCAGCATC
Band lengths:
257-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]